NOIDs causative agents: week 13 (week ending 31 March 2024)
Updated 23 December 2024
Applies to England and Wales
Laboratories in England have a statutory duty to notify the UK Health Security Agency of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia lamblia
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Mpox virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium Knowlesi
- Plasmodium Malariae
- Plasmodium Ovale
- Plasmodium Vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS Coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile virus
- Yellow fever virus
- Yersinia pestis
1. Statutory Notifications of causative agents, grouped by root organism
Totals for the current week compared to the previous five.
Week notification received | 2024/08 | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West Nile virus | - | - | 1 | 1 | 1 | - |
Bacillus | ||||||
Bacillus cereus | 10 | 17 | 17 | 17 | 18 | 13 |
Bordetella | ||||||
Bordetella pertussis | 94 | 121 | 93 | 132 | 127 | 153 |
Borrelia | ||||||
Borrelia burgdorferi | 12 | 13 | 13 | 9 | 13 | 8 |
Borrelia sp | 1 | 2 | 4 | 2 | 1 | 4 |
Brucella | ||||||
Brucella sp | - | 3 | - | - | 1 | - |
Burkholderia | ||||||
Burkholderia pseudomallei | - | - | - | - | - | 1 |
Campylobacter | ||||||
Campylobacter coli | 18 | 17 | 20 | 26 | 20 | 23 |
Campylobacter fetus | - | - | - | 1 | - | - |
Campylobacter hyointestinalis | - | - | 1 | - | - | - |
Campylobacter jejuni | 226 | 234 | 217 | 266 | 235 | 240 |
Campylobacter other named | 2 | - | 1 | 1 | 1 | 3 |
Campylobacter sp | 810 | 761 | 789 | 878 | 831 | 714 |
Campylobacter upsaliensis | - | 1 | - | - | 1 | - |
Campylobacter ureolyticus (bacteroides corrodens) | - | - | - | - | - | 1 |
Chikungunya virus | ||||||
Chikungunya virus | 2 | - | 1 | 1 | 2 | - |
Clostridium | ||||||
Clostridium perfringens | 32 | 31 | 35 | 47 | 33 | 33 |
Coronavirus | ||||||
Coronavirus | 177 | 234 | 152 | 180 | 152 | 151 |
Human coronavirus 229e | 3 | - | 6 | 2 | - | 3 |
Human coronavirus hku1 | 3 | 2 | 2 | 1 | 2 | - |
Human coronavirus oc43 | - | - | - | - | 1 | - |
SARS coronavirus | - | - | - | 5 | - | - |
SARS-CoV-2 antibody indeterminate | 134 | 132 | 159 | 191 | 138 | 114 |
SARS-CoV-2 antibody void | 2 | - | 2 | - | - | - |
SARS-CoV-2 coronavirus (COVID-19) | 1,783 | 1,310 | 1,217 | 1,472 | 1,296 | 1,510 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 40 | 38 | 31 | 41 | 35 | 296 |
SARS-CoV-2 IgG antibody negative | 11 | 16 | 47 | 56 | 18 | 13 |
SARS-CoV-2 IgG antibody positive | 91 | 160 | 311 | 353 | 136 | 85 |
SARS-CoV-2 total antibody negative | 51 | 7 | 3,540 | 25 | 15 | 17 |
SARS-CoV-2 total antibody positive | 122 | 40 | 693 | 114 | 72 | 55 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 4 | 3 | - | 4 | 1 | 1 |
Coxiella | ||||||
Coxiella burnetii | - | 1 | - | - | - | - |
Cryptosporidium | ||||||
Cryptosporidium hominis | 9 | 15 | 15 | 11 | 11 | 2 |
Cryptosporidium meleagridis | 1 | - | - | - | - | 1 |
Cryptosporidium parvum | 8 | 26 | 50 | 39 | 24 | 9 |
Cryptosporidium sp | 17 | 24 | 33 | 29 | 28 | 66 |
Entamoeba | ||||||
Entamoeba histolytica | 2 | 1 | 1 | 2 | 2 | 1 |
Escherichia | ||||||
Escherichia coli O 157 | 6 | 14 | 6 | 5 | 8 | 3 |
Flaviviruses | ||||||
Dengue virus | 11 | 5 | 8 | 7 | 5 | 4 |
Haemophilus | ||||||
Haemophilus influenzae | 72 | 80 | 82 | 88 | 74 | 59 |
Hepatitis viruses | ||||||
Hepatitis A | 14 | 26 | 21 | 18 | 18 | 10 |
Hepatitis B | 407 | 354 | 351 | 385 | 346 | 300 |
Hepatitis C | 282 | 268 | 217 | 252 | 245 | 198 |
Hepatitis D | 9 | 4 | 11 | 11 | 6 | 3 |
Hepatitis E | 32 | 42 | 21 | 35 | 19 | 19 |
Influenza virus | ||||||
Influenza A | 2,554 | 2,053 | 1,929 | 2,107 | 1,461 | 1,440 |
Influenza B | 367 | 344 | 401 | 542 | 477 | 396 |
Influenza indeterminate | 8 | 7 | - | 10 | 3 | 1 |
Influenza ungrouped | 114 | 51 | 38 | 52 | 43 | 33 |
Legionella | ||||||
Legionella pneumophila | 5 | 1 | 3 | 4 | 2 | 13 |
Legionella sp | 1 | 6 | 3 | 3 | 3 | 1 |
Leptospira | ||||||
Leptospira interrogans | - | - | - | - | 1 | - |
Listeria | ||||||
Listeria monocytogenes | 2 | 2 | 5 | 6 | 3 | 7 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 75 | 91 | 65 | 70 | 99 | 61 |
Neisseria | ||||||
Neisseria meningitidis | 24 | 23 | 21 | 38 | 15 | 19 |
Orthopoxvirus | ||||||
Mpox virus | 3 | 1 | 4 | 1 | 3 | 8 |
Paramyxoviruses | ||||||
Measles virus | 59 | 57 | 42 | 62 | 54 | 57 |
Mumps virus | 10 | 12 | 10 | 12 | 5 | 14 |
Plasmodium | ||||||
Plasmodium falciparum | 23 | 1 | - | - | 10 | - |
Plasmodium malariae | - | - | - | - | 1 | - |
Plasmodium ovale | 3 | - | - | - | 2 | - |
Plasmodium vivax | 1 | - | - | - | 1 | - |
Polyomavirus | ||||||
Polyomavirus BK | 66 | 55 | 38 | 53 | 54 | 44 |
Polyomavirus JC | 14 | 2 | 4 | 5 | 6 | 12 |
Polyomavirus untyped | 22 | 6 | 11 | 16 | 5 | 21 |
Rickettsia | ||||||
Rickettsia prowazekii | - | - | 1 | - | - | - |
Rickettsia spotted fever | 1 | - | 1 | - | 1 | - |
Rubella virus | ||||||
Rubella virus | 3 | 2 | 3 | 5 | 6 | 4 |
Salmonella | ||||||
Other salmonellas | 57 | 62 | 48 | 50 | 32 | 10 |
Salmonella anatum | 5 | - | - | - | - | - |
Salmonella chester | 6 | - | - | - | - | - |
Salmonella enterica | - | 6 | - | - | - | - |
Salmonella enteritidis | 24 | 39 | 30 | 23 | 14 | - |
Salmonella java | 6 | - | - | - | - | - |
Salmonella newport | - | 5 | 7 | 9 | - | - |
Salmonella sp | 11 | 7 | 15 | 40 | 74 | 113 |
Salmonella typhi and paratyphi | 15 | 15 | 22 | 23 | 15 | 9 |
Salmonella typhimurium | 24 | 28 | 20 | 16 | 11 | 7 |
Shigella | ||||||
Shigella boydii | 3 | 2 | 3 | 1 | - | 1 |
Shigella dysenteriae | 2 | - | 1 | - | 1 | - |
Shigella flexneri | 14 | 16 | 13 | 16 | 15 | 8 |
Shigella sonnei | 21 | 33 | 20 | 25 | 19 | 18 |
Shigella sp | 55 | 58 | 48 | 57 | 84 | 57 |
Streptococcus | ||||||
Streptococcus group A | 85 | 72 | 79 | 77 | 77 | 65 |
Streptococcus pneumoniae | 152 | 138 | 133 | 151 | 142 | 121 |
Vibrio | ||||||
Vibrio cholerae | - | 2 | 1 | - | 1 | 1 |
2. Carbapenemase-producing Enterobacterales (CPE)
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/08 | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 | |
---|---|---|---|---|---|---|---|
Citrobacter | |||||||
Citrobacter spp | IMP | 1 | - | - | - | - | - |
KPC | 1 | - | 1 | - | 2 | 1 | |
NDM | - | 2 | 1 | 1 | 1 | - | |
OXA48 | 1 | 1 | 2 | 1 | 2 | - | |
Other | - | - | - | - | 1 | - | |
Enterobacter | |||||||
Enterobacter cloacae complex | IMP | - | - | 1 | 4 | 2 | 1 |
KPC | 4 | 6 | 6 | 2 | 6 | 3 | |
NDM | 8 | 10 | 2 | 5 | 4 | - | |
OXA48 | 6 | 5 | 4 | 9 | - | 1 | |
VIM | 1 | - | - | - | - | - | |
Other | - | 1 | - | 1 | 1 | - | |
Enterobacter other named | OXA48 | - | - | 1 | - | - | - |
Other enterobacter spp | IMP | - | - | 1 | - | 1 | - |
KPC | 1 | - | - | - | - | - | |
NDM | - | - | - | 1 | 2 | - | |
OXA48 | 1 | - | - | - | 1 | - | |
VIM | - | - | - | - | 1 | - | |
Escherichia | |||||||
Escherichia coli | KPC | 2 | 1 | 3 | - | 1 | 2 |
NDM | 7 | 16 | 14 | 14 | 19 | 4 | |
OXA48 | 23 | 15 | 10 | 19 | 18 | 7 | |
VIM | 1 | - | - | - | - | - | |
Other | 1 | 3 | 2 | 1 | 1 | - | |
Escherichia hermannii | KPC | 1 | - | - | - | - | - |
Hafnia | |||||||
Hafnia alvei | Other | - | - | - | - | 1 | - |
Klebsiella | |||||||
Klebsiella aerogenes | NDM | - | 1 | - | - | - | - |
OXA48 | 1 | - | - | - | - | - | |
Klebsiella oxytoca | KPC | 3 | 4 | 4 | 1 | 6 | 1 |
NDM | - | - | - | - | - | 1 | |
OXA48 | 2 | 2 | - | - | - | - | |
VIM | - | 1 | - | - | - | - | |
Klebsiella pneumoniae | IMP | - | - | 1 | 2 | - | 1 |
KPC | 4 | 4 | 6 | 4 | 4 | - | |
NDM | 8 | 6 | 6 | 9 | 3 | 1 | |
OXA48 | 16 | 16 | 8 | 9 | 7 | 3 | |
VIM | 1 | - | - | - | 2 | - | |
Other | 1 | 1 | 2 | 1 | 1 | - | |
Klebsiella variicola | KPC | 1 | - | 1 | - | - | - |
NDM | - | 1 | - | - | - | - | |
OXA48 | 1 | - | - | - | - | - | |
Other klebsiella spp | OXA48 | - | 1 | - | - | - | - |
Leclercia | |||||||
Leclercia adecarboxylata | KPC | 1 | 1 | - | 1 | - | - |
Other | 1 | - | - | - | - | - | |
Other leclercia spp | NDM | - | - | - | - | 1 | - |
Mixta | |||||||
Mixta calida | NDM | - | - | - | - | 1 | - |
Morganella | |||||||
Morganella morganii | NDM | - | 1 | - | - | - | - |
Proteus | |||||||
Proteus mirabilis | IMP | - | - | - | 2 | - | - |
NDM | 1 | 1 | - | 1 | - | - | |
OXA48 | - | 2 | - | - | - | - | |
Other | - | - | - | 1 | - | - | |
Raoultella | |||||||
Raoultella spp | KPC | - | - | - | - | - | 1 |
Serratia | |||||||
Serratia grimesii/liquefaciens/proteamaculans | NDM | - | - | - | - | 1 | - |
OXA48 | - | - | - | - | 1 | - | |
Serratia marcescens/ureilytica | OXA48 | - | 1 | - | - | - | - |
3. Other carbapenemase-producing Gram-negative organisms
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/08 | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 | |
---|---|---|---|---|---|---|---|
Acinetobacter | |||||||
Acinetobacter baumannii | NDM | 1 | 2 | - | 1 | - | - |
Acinetobacter calcoaceticus/baumannii complex | NDM | - | - | - | - | - | 1 |
Pseudomonas | |||||||
Pseudomonas aeruginosa | NDM | 1 | - | - | - | 1 | - |
VIM | - | - | - | 1 | - | 1 | |
Other | - | 1 | 1 | 2 | 1 | 1 | |
Pseudomonas putida group | VIM | - | - | - | 1 | - | - |
Other | |||||||
NDM | 1 | - | - | - | - | - |