NOIDs causative agents: week 14 (week ending 7 April 2024)
Updated 23 December 2024
Applies to England and Wales
Laboratories in England have a statutory duty to notify the UK Health Security Agency of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia lamblia
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Mpox virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium Knowlesi
- Plasmodium Malariae
- Plasmodium Ovale
- Plasmodium Vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS Coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile virus
- Yellow fever virus
- Yersinia pestis
Statutory Notifications of causative agents, grouped by root organism
Totals for the current week compared to the previous five.
Week notification received | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 | 2024/14 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West Nile virus | - | 1 | 1 | 1 | - | - |
Bacillus | ||||||
Bacillus cereus | 17 | 17 | 17 | 18 | 13 | 15 |
Bordetella | ||||||
Bordetella pertussis | 121 | 96 | 134 | 133 | 158 | 199 |
Borrelia | ||||||
Borrelia burgdorferi | 13 | 13 | 9 | 13 | 8 | 8 |
Borrelia sp | 2 | 4 | 2 | 1 | 4 | 1 |
Brucella | ||||||
Brucella sp | 3 | - | - | 1 | - | - |
Burkholderia | ||||||
Burkholderia pseudomallei | - | - | - | - | 1 | - |
Campylobacter | ||||||
Campylobacter coli | 17 | 20 | 27 | 21 | 26 | 20 |
Campylobacter fetus | - | - | 1 | - | - | - |
Campylobacter hyointestinalis | - | 1 | - | - | - | - |
Campylobacter jejuni | 234 | 217 | 278 | 255 | 280 | 185 |
Campylobacter lari | - | - | - | - | - | 2 |
Campylobacter other named | - | 1 | 1 | 1 | 3 | 1 |
Campylobacter sp | 762 | 789 | 888 | 843 | 702 | 714 |
Campylobacter upsaliensis | 1 | - | - | 1 | - | - |
Campylobacter ureolyticus (bacteroides corrodens) | - | - | - | 1 | 1 | - |
Chikungunya virus | ||||||
Chikungunya virus | - | 1 | 1 | 2 | - | 1 |
Clostridium | ||||||
Clostridium perfringens | 31 | 35 | 47 | 35 | 33 | 36 |
Coronavirus | ||||||
Coronavirus | 234 | 152 | 180 | 153 | 152 | 112 |
Human coronavirus 229e | - | 6 | 2 | - | 3 | - |
Human coronavirus hku1 | 2 | 2 | 1 | 2 | - | - |
Human coronavirus oc43 | - | - | - | 1 | - | - |
SARS coronavirus | - | - | 5 | - | - | - |
SARS-CoV-2 antibody indeterminate | 132 | 159 | 191 | 138 | 114 | 111 |
SARS-CoV-2 antibody void | - | 2 | - | - | - | - |
SARS-CoV-2 coronavirus (COVID-19) | 1,312 | 1,217 | 1,473 | 1,293 | 1,499 | 1,279 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 38 | 31 | 41 | 35 | 296 | 36 |
SARS-CoV-2 IgG antibody negative | 16 | 47 | 56 | 18 | 13 | 8 |
SARS-CoV-2 IgG antibody positive | 160 | 311 | 353 | 136 | 85 | 63 |
SARS-CoV-2 total antibody negative | 7 | 3540 | 25 | 15 | 17 | 7 |
SARS-CoV-2 total antibody positive | 40 | 694 | 115 | 72 | 55 | 19 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 3 | - | 4 | 1 | 1 | 1 |
Coxiella | ||||||
Coxiella burnetii | 1 | - | - | - | - | 2 |
Cryptosporidium | ||||||
Cryptosporidium felis | - | - | - | - | - | 1 |
Cryptosporidium hominis | 15 | 17 | 12 | 14 | 13 | - |
Cryptosporidium meleagridis | - | - | - | 1 | 1 | - |
Cryptosporidium parvum | 26 | 51 | 44 | 31 | 37 | 8 |
Cryptosporidium sp | 24 | 30 | 29 | 22 | 35 | 82 |
Entamoeba | ||||||
Entamoeba histolytica | 1 | 1 | 2 | 2 | 1 | - |
Escherichia | ||||||
Escherichia coli O 157 | 14 | 6 | 6 | 8 | 3 | 3 |
Flaviviruses | ||||||
Dengue virus | 5 | 8 | 7 | 5 | 4 | 7 |
Haemophilus | ||||||
Haemophilus influenzae | 80 | 82 | 88 | 74 | 59 | 57 |
Hepatitis viruses | ||||||
Hepatitis A | 26 | 21 | 18 | 18 | 11 | 17 |
Hepatitis B | 355 | 356 | 390 | 351 | 329 | 235 |
Hepatitis C | 268 | 218 | 257 | 249 | 212 | 161 |
Hepatitis D | 4 | 11 | 11 | 6 | 3 | 7 |
Hepatitis E | 42 | 22 | 35 | 19 | 19 | 25 |
Influenza virus | ||||||
Influenza A | 2,055 | 1,929 | 2,132 | 1,503 | 1,460 | 957 |
Influenza B | 344 | 401 | 548 | 497 | 411 | 407 |
Influenza indeterminate | 7 | - | 10 | 3 | 1 | 3 |
Influenza ungrouped | 51 | 38 | 52 | 43 | 33 | 24 |
Legionella | ||||||
Legionella pneumophila | 1 | 3 | 4 | 2 | 13 | 7 |
Legionella sp | 6 | 3 | 4 | 5 | 2 | - |
Leptospira | ||||||
Leptospira interrogans | - | - | - | 1 | - | - |
Listeria | ||||||
Listeria monocytogenes | 2 | 5 | 7 | 5 | 7 | 5 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 95 | 67 | 76 | 106 | 60 | 71 |
Neisseria | ||||||
Neisseria meningitidis | 23 | 21 | 38 | 15 | 19 | 18 |
Orthopoxvirus | ||||||
Mpox virus | 1 | 4 | 1 | 3 | 8 | 4 |
Paramyxoviruses | ||||||
Measles virus | 56 | 43 | 62 | 54 | 57 | 58 |
Mumps virus | 12 | 10 | 12 | 5 | 14 | 12 |
Plasmodium | ||||||
Plasmodium falciparum | 1 | - | - | 10 | - | 1 |
Plasmodium malariae | - | - | - | 1 | - | - |
Plasmodium ovale | - | - | - | 2 | - | - |
Plasmodium vivax | - | - | - | 1 | - | - |
Polyomavirus | ||||||
Polyomavirus BK | 55 | 38 | 53 | 54 | 44 | 35 |
Polyomavirus JC | 2 | 4 | 5 | 6 | 12 | 3 |
Polyomavirus untyped | 6 | 11 | 16 | 5 | 21 | 11 |
Rickettsia | ||||||
Rickettsia prowazekii | - | 1 | - | - | - | - |
Rickettsia spotted fever | - | 1 | - | 1 | - | 1 |
Rubella virus | ||||||
Rubella virus | 2 | 3 | 5 | 6 | 4 | 5 |
Salmonella | ||||||
Other salmonellas | 62 | 48 | 59 | 49 | 15 | 18 |
Salmonella enterica | 6 | - | - | - | - | - |
Salmonella enteritidis | 39 | 30 | 28 | 28 | 8 | 11 |
Salmonella newport | 5 | 7 | 10 | 6 | - | - |
Salmonella sp | 7 | 15 | 28 | 26 | 88 | 75 |
Salmonella typhi and paratyphi | 15 | 22 | 23 | 15 | 16 | 20 |
Salmonella typhimurium | 28 | 20 | 21 | 18 | 15 | 10 |
Slmonella enterica | - | - | - | 5 | - | - |
Shigella | ||||||
Shigella boydii | 2 | 3 | 1 | - | 1 | 2 |
Shigella dysenteriae | - | 1 | - | 1 | - | - |
Shigella flexneri | 16 | 13 | 16 | 22 | 11 | 9 |
Shigella sonnei | 33 | 20 | 25 | 22 | 16 | 11 |
Shigella sp | 58 | 48 | 57 | 79 | 52 | 54 |
Streptococcus | ||||||
Streptococcus group A | 72 | 79 | 78 | 78 | 68 | 81 |
Streptococcus pneumoniae | 138 | 133 | 153 | 143 | 125 | 138 |
Vibrio | ||||||
Vibrio cholerae | 2 | 1 | - | 1 | 1 | - |
Carbapenemase-producing Enterobacterales (CPE)
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 | 2024/14 | |
---|---|---|---|---|---|---|---|
Citrobacter | |||||||
Citrobacter spp | KPC | - | 1 | - | 2 | 1 | 1 |
NDM | 2 | 1 | 1 | 1 | - | - | |
OXA48 | 1 | 2 | 2 | 2 | - | - | |
Other | - | - | - | 1 | - | - | |
Cronobacter | |||||||
Cronobacter sakazakii | KPC | - | - | - | - | - | 1 |
Enterobacter | |||||||
Enterobacter cloacae complex | IMP | 1 | 1 | 4 | 2 | 2 | - |
KPC | 6 | 6 | 2 | 6 | 4 | - | |
NDM | 10 | 2 | 5 | 4 | 4 | 4 | |
OXA48 | 5 | 5 | 9 | - | 3 | 1 | |
Other | 1 | - | 1 | 1 | 1 | - | |
Enterobacter other named | OXA48 | - | 1 | - | - | - | - |
Other enterobacter spp | IMP | - | 1 | - | 1 | - | - |
NDM | - | - | 1 | 2 | 2 | - | |
OXA48 | - | - | - | 1 | - | - | |
VIM | - | - | - | 1 | - | - | |
Escherichia | |||||||
Escherichia coli | KPC | 1 | 3 | - | 2 | 3 | 2 |
NDM | 16 | 15 | 14 | 22 | 19 | 5 | |
OXA48 | 15 | 12 | 20 | 21 | 22 | 7 | |
Other | 3 | 2 | 1 | 1 | 1 | - | |
Hafnia | |||||||
Hafnia alvei | Other | - | - | - | 1 | - | - |
Klebsiella | |||||||
Klebsiella aerogenes | NDM | 1 | - | - | - | - | - |
Klebsiella oxytoca | KPC | 4 | 4 | 1 | 6 | 1 | 4 |
NDM | - | - | - | - | 1 | - | |
OXA48 | 2 | 1 | - | - | - | - | |
VIM | 1 | - | - | - | - | - | |
Klebsiella pneumoniae | IMP | - | 1 | 2 | - | 1 | - |
KPC | 4 | 6 | 4 | 5 | 6 | 3 | |
NDM | 6 | 6 | 10 | 6 | 6 | 4 | |
OXA48 | 16 | 9 | 9 | 9 | 10 | 4 | |
VIM | - | - | - | 2 | - | - | |
Other | 1 | 2 | 1 | 1 | - | - | |
Klebsiella variicola | KPC | - | 1 | - | - | - | - |
NDM | 1 | - | - | - | - | - | |
Other klebsiella spp | NDM | - | 1 | - | - | 1 | - |
OXA48 | 1 | 1 | - | - | 1 | - | |
Leclercia | |||||||
Leclercia adecarboxylata | KPC | 1 | - | 1 | - | - | - |
Other leclercia spp | NDM | - | - | - | 1 | - | - |
Mixta | |||||||
Mixta calida | NDM | - | - | - | 1 | - | - |
Morganella | |||||||
Morganella morganii | NDM | 1 | - | - | - | - | - |
Proteus | |||||||
Proteus mirabilis | IMP | - | - | 2 | - | - | - |
NDM | 1 | - | 1 | - | - | - | |
OXA48 | 2 | - | - | - | - | - | |
Other | - | - | 1 | - | - | - | |
Raoultella | |||||||
Raoultella spp | KPC | - | - | - | - | 1 | - |
Serratia | |||||||
Serratia grimesii/liquefaciens/proteamaculans | NDM | - | - | - | 1 | - | - |
OXA48 | - | - | - | 1 | - | - | |
Serratia marcescens/ureilytica | OXA48 | 1 | - | - | - | - | - |
Other carbapenemase-producing Gram-negative organisms
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/09 | 2024/10 | 2024/11 | 2024/12 | 2024/13 | 2024/14 | |
---|---|---|---|---|---|---|---|
Acinetobacter | |||||||
Acinetobacter baumannii | NDM | 2 | - | 1 | - | - | - |
Acinetobacter calcoaceticus/baumannii complex | NDM | - | - | - | - | 1 | - |
Pseudomonas | |||||||
Pseudomonas aeruginosa | NDM | - | - | - | 1 | 1 | - |
VIM | - | - | 1 | - | 1 | - | |
Other | 1 | 1 | 2 | 1 | 2 | - | |
Pseudomonas putida group | VIM | - | - | 1 | - | - | - |