NOIDs causative agents: week 37 (week ending 15 September 2024)
Updated 23 December 2024
Applies to England and Wales
Laboratories in England have a statutory duty to notify the UK Health Security Agency of the identification of the following causative agents:
- Bacillus anthracis
- Bacillus cereus
- Bordetella pertussis
- Borrelia spp
- Brucella spp
- Burkholderia mallei
- Burkholderia pseudomallei
- Campylobacter spp
- Carbapenemase-producing Gram-negative bacteria
- Chikungunya virus
- Chlamydophila psittaci
- Clostridium botulinum
- Clostridium perfringens
- Clostridium tetani
- Corynebacterium diphtheriae
- Corynebacterium ulcerans
- Coxiella burnetii
- Crimean-Congo haemorrhagic fever virus
- Cryptosporidium spp
- Dengue virus
- Ebola virus
- Entamoeba histolytica
- Escherichia coli O 157
- Francisella tularensis
- Giardia spp
- Guanarito virus
- Haemophilus influenzae (invasive)
- Hanta virus
- Hepatitis A
- Hepatitis B
- Hepatitis C
- Hepatitis D
- Hepatitis E
- Influenza virus
- Junin virus
- Kyasanur Forest disease virus
- Lassa virus
- Legionella spp
- Leptospira interrogans
- Listeria monocytogenes
- Machupo virus
- Marburg virus
- Measles virus
- Mpox virus
- Mumps virus
- Mycobacterium tuberculosis complex
- Neisseria meningitidis
- Omsk haemorrhagic fever virus
- Plasmodium falciparum
- Plasmodium Knowlesi
- Plasmodium Malariae
- Plasmodium Ovale
- Plasmodium Vivax
- Polio virus
- Rabies virus
- Rickettsia spp
- Rift Valley fever virus
- Rubella virus
- Sabia virus
- Salmonella spp
- SARS Coronavirus
- Shigella spp
- Streptococcus group A (invasive)
- Streptococcus pneumoniae (invasive)
- Varicella zoster virus
- Variola virus
- Vibrio cholerae
- West Nile virus
- Yellow fever virus
- Yersinia pestis
Statutory notifications of causative agents, grouped by root organism
Totals for the current week compared to the previous 5.
Week notification received | 2024/32 | 2024/33 | 2024/34 | 2024/35 | 2024/36 | 2024/37 |
---|---|---|---|---|---|---|
Arboviruses | ||||||
West Nile Virus | 1 | - | 1 | 1 | - | - |
Bacillus | ||||||
Bacillus cereus | 31 | 30 | 28 | 19 | 27 | 18 |
Bordetella | ||||||
Bordetella pertussis | 268 | 253 | 142 | 107 | 100 | 102 |
Borrelia | ||||||
Borrelia burgdorferi | 28 | 38 | 27 | 45 | 62 | 50 |
Borrelia sp | 5 | 8 | 5 | 6 | 13 | 8 |
Brucella | ||||||
Brucella melitensis | 1 | - | - | - | - | 1 |
Brucella sp | - | 2 | - | - | 1 | 1 |
Burkholderia | ||||||
Burkholderia pseudomallei | 1 | - | - | - | - | - |
Campylobacter | ||||||
Campylobacter coli | 72 | 59 | 71 | 58 | 62 | 52 |
Campylobacter fetus | - | 1 | - | - | 1 | - |
Campylobacter jejuni | 321 | 271 | 322 | 319 | 358 | 314 |
Campylobacter lari | 1 | - | - | - | - | - |
Campylobacter other named | 2 | 4 | 1 | 1 | 2 | 2 |
Campylobacter sp | 1,199 | 1,272 | 1,204 | 1,079 | 1,250 | 1,273 |
Campylobacter upsaliensis | 3 | 1 | - | 1 | 2 | 1 |
Campylobacter ureolyticus (bacteroides corrodens) | 1 | - | 2 | 1 | 2 | 1 |
Chikungunya virus | ||||||
Chikungunya virus | 2 | 1 | 4 | 2 | - | - |
Clostridium | ||||||
Clostridium perfringens | 30 | 34 | 28 | 28 | 23 | 29 |
Coronavirus | ||||||
Coronavirus | 16 | 18 | 20 | 21 | 15 | 9 |
SARS coronavirus | 2 | - | - | 1 | - | 2 |
SARS-CoV-2 antibody indeterminate | 70 | 82 | 77 | 87 | 60 | 122 |
SARS-CoV-2 antibody void | 2 | 6 | - | - | 2 | - |
SARS-CoV-2 coronavirus (COVID-19) | 2,084 | 1,688 | 1,406 | 1,582 | 1,726 | 1,714 |
SARS-CoV-2 coronavirus (COVID-19) indeterminate | 60 | 55 | 62 | 41 | 72 | 58 |
SARS-CoV-2 IgG antibody negative | 17 | 13 | 15 | 8 | 16 | 36 |
SARS-CoV-2 IgG antibody positive | 113 | 104 | 84 | 62 | 113 | 337 |
SARS-CoV-2 total antibody negative | 10 | 20 | 6 | 16 | 22 | 11 |
SARS-CoV-2 total antibody positive | 54 | 41 | 61 | 49 | 37 | 63 |
Corynebacterium | ||||||
Corynebacterium diphtheriae | 2 | 1 | - | 1 | 3 | 1 |
Corynebacterium ulcerans | - | 1 | - | 1 | 1 | 1 |
Coxiella | ||||||
Coxiella burnetii | - | - | 1 | - | - | 3 |
Cryptosporidium | ||||||
Cryptosporidium cuniculus | 1 | - | - | 1 | - | - |
Cryptosporidium felis | - | - | - | 1 | - | - |
Cryptosporidium hominis | 15 | 22 | 19 | 21 | 39 | 12 |
Cryptosporidium parvum | 51 | 29 | 42 | 67 | 66 | 26 |
Cryptosporidium sp | 27 | 37 | 47 | 42 | 74 | 118 |
Cryptosporidium ubiquitum | 1 | - | - | - | - | - |
Cryptosporidium viatorum | - | 1 | - | - | - | - |
Entamoeba | ||||||
Entamoeba histolytica | 1 | - | - | 2 | 2 | 1 |
Escherichia | ||||||
Escherichia coli O 157 | 16 | 21 | 16 | 16 | 27 | 25 |
Flaviviruses | ||||||
Dengue virus | 8 | 6 | 10 | 13 | 9 | 18 |
Giardia | ||||||
Giardia sp | 93 | 117 | 111 | 95 | 143 | 148 |
Haemophilus | ||||||
Haemophilus influenzae | 50 | 44 | 59 | 62 | 46 | 37 |
Hepatitis viruses | ||||||
Hepatitis A | 15 | 11 | 23 | 12 | 20 | 25 |
Hepatitis B | 306 | 313 | 314 | 229 | 281 | 270 |
Hepatitis C | 289 | 280 | 236 | 255 | 241 | 250 |
Hepatitis D | 4 | 7 | 9 | 4 | 6 | 10 |
Hepatitis E | 34 | 34 | 33 | 18 | 34 | 42 |
Influenza virus | ||||||
Influenza A | 262 | 232 | 220 | 227 | 218 | 236 |
Influenza B | 24 | 19 | 20 | 22 | 16 | 22 |
Influenza indeterminate | - | 1 | 1 | - | 1 | - |
Influenza ungrouped | 4 | 4 | 8 | 5 | 8 | 5 |
Legionella | ||||||
Legionella longbeachae | - | 1 | - | - | - | - |
Legionella pneumophila | 3 | 8 | 7 | 15 | 5 | 5 |
Legionella sp | 1 | 1 | 3 | 2 | 2 | 5 |
Leptospira | ||||||
Leptospira interrogans | 1 | - | - | - | - | 1 |
Listeria | ||||||
Listeria monocytogenes | 5 | 2 | 4 | 3 | 2 | 8 |
Mycobacterium | ||||||
Mycobacterium tuberculosis | 107 | 85 | 116 | 68 | 87 | 98 |
Neisseria | ||||||
Neisseria meningitidis | 16 | 14 | 9 | 12 | 12 | 24 |
Orthopoxvirus | ||||||
Mpox virus | 14 | 17 | 14 | 6 | 17 | 19 |
Paramyxoviruses | ||||||
Measles virus | 55 | 34 | 48 | 32 | 27 | 22 |
Mumps virus | 6 | 8 | 5 | 4 | 1 | 4 |
Plasmodium | ||||||
Plasmodium falciparum | 14 | - | - | 2 | 28 | - |
Plasmodium ovale | - | - | - | - | 1 | 1 |
Plasmodium vivax | 1 | - | - | - | - | - |
Polyomavirus | ||||||
Polyomavirus BK | 66 | 33 | 63 | 45 | 60 | 64 |
Polyomavirus JC | 7 | 5 | 10 | 5 | 15 | 10 |
Polyomavirus untyped | 8 | 16 | 10 | 12 | 14 | 22 |
Rabies virus | ||||||
Rabies virus | - | 1 | - | - | - | - |
Rickettsia | ||||||
Rickettsia mooseri | - | - | - | 1 | - | - |
Rickettsia sp | - | - | 1 | - | - | - |
Rickettsia spotted fever | 1 | - | 1 | - | - | - |
Rubella virus | ||||||
Rubella virus | 6 | 4 | 1 | 3 | 1 | 1 |
Salmonella | ||||||
Other salmonellas | 82 | 71 | 74 | 78 | 65 | 31 |
Salmonella agona | - | 10 | - | - | - | - |
Salmonella blockley | 10 | 12 | 8 | 18 | 10 | - |
Salmonella bovis-morbificans | - | - | 5 | - | - | - |
Salmonella chester | - | - | - | - | 5 | - |
Salmonella enterica | - | 7 | - | - | 5 | - |
Salmonella enteritidis | 109 | 85 | 114 | 112 | 76 | 23 |
Salmonella infantis | - | - | 7 | - | - | - |
Salmonella kentucky | - | 5 | - | - | - | - |
Salmonella napoli | - | 5 | - | - | - | - |
Salmonella newport | 8 | 7 | 7 | 5 | 11 | - |
Salmonella oranienburg | - | - | - | 5 | - | - |
Salmonella sp | 53 | 41 | 39 | 41 | 198 | 338 |
Salmonella typhi and paratyphi | 14 | 11 | 17 | 17 | 13 | 17 |
Salmonella typhimurium | 38 | 47 | 46 | 44 | 33 | 14 |
Slmonella enterica | - | 6 | 6 | - | - | 8 |
Shigella | ||||||
Shigella boydii | 1 | 2 | 1 | - | - | 1 |
Shigella dysenteriae | - | - | - | 1 | - | 1 |
Shigella flexneri | 18 | 18 | 14 | 16 | 15 | 10 |
Shigella sonnei | 25 | 35 | 14 | 22 | 20 | 13 |
Shigella sp | 64 | 76 | 68 | 59 | 88 | 101 |
Streptococcus | ||||||
Streptococcus group A | 52 | 34 | 54 | 64 | 68 | 62 |
Streptococcus pneumoniae | 62 | 63 | 61 | 58 | 44 | 61 |
Vibrio | ||||||
Vibrio cholerae | 2 | 3 | 2 | 1 | 2 | 1 |
Carbapenemase-producing Enterobacterales (CPE)
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/32 | 2024/33 | 2024/34 | 2024/35 | 2024/36 | 2024/37 | |
---|---|---|---|---|---|---|---|
Citrobacter | |||||||
Citrobacter spp | IMP | - | - | 1 | - | - | - |
KPC | 1 | - | 2 | 1 | - | - | |
NDM | 2 | 2 | 1 | - | 1 | - | |
OXA48 | 4 | 3 | 1 | 1 | - | - | |
Other | - | 1 | - | - | - | - | |
Enterobacter | |||||||
Enterobacter cloacae complex | IMP | 5 | 11 | 2 | 2 | 1 | - |
KPC | 6 | 7 | 6 | 7 | 3 | 7 | |
NDM | 8 | 11 | 11 | 3 | 3 | 2 | |
OXA48 | 5 | 4 | 5 | 4 | 6 | 2 | |
VIM | - | 1 | 2 | - | - | - | |
Other | 1 | 1 | 2 | - | - | - | |
Other enterobacter spp | IMP | - | 2 | - | - | 1 | - |
KPC | - | - | 1 | - | - | - | |
NDM | 1 | 1 | - | - | 3 | - | |
OXA48 | - | 1 | 1 | 1 | 1 | - | |
VIM | - | 2 | - | - | 2 | - | |
Escherichia | |||||||
Escherichia coli | IMP | 1 | - | - | - | 1 | - |
KPC | 7 | 9 | 7 | 4 | 6 | 1 | |
NDM | 10 | 22 | 9 | 19 | 14 | 6 | |
OXA48 | 21 | 18 | 18 | 19 | 15 | 9 | |
VIM | - | - | 1 | - | - | - | |
Other | 1 | 1 | 1 | 1 | 2 | 1 | |
Escherichia hermannii | IMP | - | - | 1 | - | - | - |
OXA48 | - | - | 1 | - | - | - | |
Klebsiella | |||||||
Klebsiella aerogenes | IMP | - | 1 | - | - | - | - |
OXA48 | - | - | 1 | - | - | - | |
Klebsiella oxytoca | KPC | 1 | - | - | 1 | 1 | - |
NDM | 2 | - | - | - | - | - | |
OXA48 | - | 1 | 1 | - | 3 | - | |
Klebsiella pneumoniae | IMP | - | 2 | 3 | 2 | 5 | - |
KPC | 16 | 14 | 35 | 17 | 12 | 11 | |
NDM | 8 | 12 | 8 | 14 | 6 | 2 | |
OXA48 | 9 | 13 | 16 | 9 | 11 | 4 | |
VIM | - | 2 | - | 1 | 1 | - | |
Other | 1 | 1 | 3 | 1 | 1 | 1 | |
Klebsiella variicola | KPC | - | - | - | - | - | 1 |
NDM | - | - | - | - | - | 1 | |
OXA48 | 1 | - | - | 1 | - | - | |
Other klebsiella spp | OXA48 | - | 1 | - | 1 | - | - |
Leclercia | |||||||
Leclercia adecarboxylata | KPC | 1 | - | - | - | - | - |
Morganella | |||||||
Morganella morganii | OXA48 | - | 1 | - | - | - | - |
Other | - | - | 1 | - | - | - | |
Pantoea | |||||||
Pantoea agglomerans | IMP | - | - | 1 | - | - | - |
OXA48 | - | - | 1 | - | - | - | |
Pantoea septica | KPC | - | - | - | 1 | - | - |
Pluralibacter | |||||||
Pluralibacter spp | KPC | - | - | - | - | - | 1 |
Proteus | |||||||
Proteus mirabilis | NDM | - | 1 | 1 | 1 | - | - |
Proteus vulgaris | OXA48 | - | - | - | 1 | - | - |
Other proteus spp | NDM | - | - | - | 1 | - | - |
Raoultella | |||||||
Raoultella ornithinolytica | OXA48 | - | - | 2 | - | - | - |
Serratia | |||||||
Serratia marcescens/ureilytica | IMP | 1 | - | - | - | - | - |
Other | - | - | - | 1 | - | - |
Other carbapenemase-producing Gram-negative organisms
For all Carbapenemase-producing Gram-negative organisms, the reports are de-duplicated by first mention of organism species and resistance mechanism by person in a rolling 52-week period.
Note: the numbers presented here do not include specimens that have been referred to the AMRHAI Reference Unit.
Week notification received | 2024/32 | 2024/33 | 2024/34 | 2024/35 | 2024/36 | 2024/37 | |
---|---|---|---|---|---|---|---|
Acinetobacter | |||||||
Acinetobacter baumannii | NDM | 2 | 3 | 1 | - | - | - |
Other | 1 | - | - | 1 | - | - | |
Pseudomonas | |||||||
Pseudomonas aeruginosa | IMP | - | 2 | - | - | - | - |
NDM | - | 4 | 1 | - | 1 | 1 | |
VIM | 1 | - | - | - | 1 | - | |
Other | 1 | 1 | 5 | 1 | 1 | 1 | |
Pseudomonas putida group | Other | - | - | - | - | 1 | - |
Pseudomonas stutzeri group | VIM | - | - | - | 1 | - | - |
Other | |||||||
KPC | - | - | 2 | - | 1 | - | |
NDM | 1 | - | 1 | - | - | - | |
OXA48 | - | 1 | 1 | - | - | - | |
VIM | - | - | - | - | 1 | - | |
Other | - | 1 | - | - | - | - |